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Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST006980
species: Physcomitrella patens
miRNA family: MIR2083
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGATTGACGAGTGCAAGAAGA

miRNA*
TTCTTGCACTCCTCCATCTCT

mismatches: 3
bulges: 0

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pre-miRNA
TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCCCCAACACCTGCACAGCGGCGGTCATGTCCGGATTAGGGATC
GTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCC
CAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTCCC


dot-bracket secondary structure
...((....)).((((((((((((.((.((((((((((...((((((.....(((....))).....))))..((((.(((..(((((((((...(((.(
((....((((((........((.((((((((...)))))))).))....)))))).((((....))))..)))...)))..)))))))))..))))))).
.))....)))))))))).)).))))))))))))...........



SIMILARITIES
miRBase ppt-MIR2083: 6e-131

PMRD ppt-miR899: 3e-65

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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deep sequencing data evidence





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